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Organisms & physiology

Showing 1–30 of 50 reference entries

BiologyCellular organization and organismal diversity

Bacteria, archaea and eukaryotes differ in important cellular organization.

Definition
BiologyXylem and phloem transport

Vascular plants move water and organic solutes through different transport tissues.

Model
BiologyGas exchange and internal transport

Diffusion across exchange surfaces and bulk transport serve different roles.

Model
BiologyNeural membrane and synaptic signalling

Membrane electrical changes and synapses connect neural cells.

Model
BiologyHormones and receptor-dependent responses

Animal hormones influence cells that possess appropriate response machinery.

Model
BiologyRenal filtration and osmoregulation

Kidney tubules modify filtered fluid through selective transport.

Model
BiologyInnate and adaptive immune principles

Barrier and recognition mechanisms cooperate with antigen-specific responses.

Model
BiologyReproduction and sexual life-cycle patterns

The placement of meiosis and fertilization differs among life cycles.

Definition
BiologyDevelopment and cell differentiation

Regulated cell states, division and spatial organization produce multicellular form.

Model
Biology · Physics · ChemistryIon equilibrium potentials and membrane current balance

An ion's equilibrium potential balances its chemical and electrical driving terms.

Model
BiologyUbiquitin, proteasomes and lysosomal turnover

Eukaryotic protein abundance depends on synthesis and degradation.

Model
BiologyCaspases and mitochondrial/death-receptor apoptosis

In representative animal apoptosis pathways, activated initiator caspases promote an execution cascade that cleaves cellular targets.

Model
BiologyBase excision versus nucleotide excision repair

Base-excision repair begins when a glycosylase removes a recognized damaged base, leaving a site that is processed and restored by DNA synthesis and ligation.

Model
BiologyNonhomologous DNA end joining

End joining can restore continuity of a double-strand-broken DNA molecule without using a long homologous donor template.

Model
BiologySensory transduction and graded receptor potentials

Sensory receptors convert appropriate physical or chemical stimuli into changes in cellular electrical signalling.

Model
BiologyExperimental units and biological inference

The experimental unit is the entity independently assigned to a treatment in a specified design.

Method
BiologyNephron transport and the concentrating gradient

In the mammalian nephron model, selective tubular transport modifies filtered fluid.

Model
BiologyVasopressin and renal sodium-water control

Vasopressin released from the posterior pituitary can increase collecting-duct water permeability through aquaporin insertion.

Model
BiologyEndocrine axes and negative feedback

In the vertebrate thyroid-axis example, hypothalamic signals stimulate pituitary hormone release, which stimulates the thyroid.

Model
BiologyHormonal coordination of glucose storage and release

In the mammalian model, pancreatic insulin and glucagon coordinate nutrient use and storage with blood-glucose availability.

Model
BiologyRespiratory partial pressures and oxygen transport

Gases diffuse across respiratory surfaces down their own partial-pressure gradients.

Model
BiologyVentilation, pressure and alveolar surface tension

Mammalian ventilation moves air when respiratory-muscle action changes thoracic volume and pressure.

Model
BiologyMammalian cardiac conduction and blood flow

Coordinated electrical activation drives atrial and ventricular contractions.

Model
BiologyActin–myosin cycling and contraction control

Myosin interaction with actin converts ATP-dependent molecular cycling into force.

Model
BiologyNeural and hormonal coordination of digestion

In the vertebrate digestive example, signals coordinate secretion, motility and delivery of material between compartments.

Model
BiologyAntigen presentation and lymphocyte specificity

In jawed-vertebrate adaptive immunity, B-cell receptors recognize suitable antigen structures, while T-cell receptors recognize antigen presented with appropriate MHC molecules.

Model
BiologyOperons and integrated bacterial transcription control

In the E. coli lac example, a repressor and a cAMP-linked activator integrate lactose-related and glucose-related conditions to regulate transcription.

Model
BiologyPost-transcriptional RNA stability and silencing

RNA-binding proteins, RNA processing and degradation influence how long a transcript remains available for translation.

Model
BiologyDevelopmental induction and positional information

Signals from one embryonic region can influence cell fate in another.

Model
BiologyDiploid viability selection as a recurrence

In a random-mating diploid model, genotype frequencies are reweighted by relative survival and normalized by mean fitness.

Model