Bayesian phylogeny and MCMC diagnostics
Research context
research method · established · As of 2026-10-10
Bayesian phylogenetic analysis combines an alignment likelihood with substitution, clock and tree priors and samples the posterior through MCMC.
Key knowledge
Bayesian phylogenetic analysis combines an alignment likelihood with substitution, clock and tree priors and samples the posterior through MCMC. Burn-in, trace behavior and effective sample size test sampling performance; posterior support remains conditional on the model and calibration.
Conditions and scope
- Run independent chains and test prior sensitivity; a visually stable trace is not proof of model adequacy or a unique history.
Sources · 1
References
Sources retain their recorded scope. A source link alone does not establish verification of every statement.
Evidence and review
First tutorial: Substitution/clock/tree priors, MCMC, burn-in and effective sample size (actual official worked tutorial)
2026-10-10 · Bounded author source inspection of bayesian phylogeny and mcmc diagnostics, including the stated conditions; independent branch review is recorded separately.
Entry details
Permanent link to this entry ↗- Record identity
- res-bio-bayesian-phylogeny
- Revision
- research.1
- Structured reference record
- Postgraduate & research reference